SDM report

Author

Mårten Erlandsson

Published

2024-03-19

1 Dataset

The models are based on trawling data on the west coast

There are three data sources; IBTS, BITS and NATS

2 Trawl surveys

Information about the trawl surveys…

3 Catches

4 Abundansmodell (SDM)

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          smallspottedCatshark     
------------------------------ 
glm        :            100   %
brt        :            100   %
rf         :            100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  smallspottedCatshark 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.85    |     0.02    |     0.16    |     -0.67    
brt        :     0.85    |     0.03    |     0.13    |     -0.67    
rf         :     0.89    |     0.02    |     0.16    |     -0.89    
```   modelID              species method replication replicationID success
1        1 smallspottedCatshark    glm subsampling             1    TRUE
2        2 smallspottedCatshark    glm subsampling             2    TRUE
3        3 smallspottedCatshark    glm subsampling             3    TRUE
4        4 smallspottedCatshark    glm subsampling             4    TRUE
5        5 smallspottedCatshark    glm subsampling             5    TRUE
6        6 smallspottedCatshark    brt subsampling             1    TRUE
7        7 smallspottedCatshark    brt subsampling             2    TRUE
8        8 smallspottedCatshark    brt subsampling             3    TRUE
9        9 smallspottedCatshark    brt subsampling             4    TRUE
10      10 smallspottedCatshark    brt subsampling             5    TRUE
11      11 smallspottedCatshark     rf subsampling             1    TRUE
12      12 smallspottedCatshark     rf subsampling             2    TRUE
13      13 smallspottedCatshark     rf subsampling             3    TRUE
14      14 smallspottedCatshark     rf subsampling             4    TRUE
15      15 smallspottedCatshark     rf subsampling             5    TRUE
   training test.dep test.indep
1      TRUE     TRUE      FALSE
2      TRUE     TRUE      FALSE
3      TRUE     TRUE      FALSE
4      TRUE     TRUE      FALSE
5      TRUE     TRUE      FALSE
6      TRUE     TRUE      FALSE
7      TRUE     TRUE      FALSE
8      TRUE     TRUE      FALSE
9      TRUE     TRUE      FALSE
10     TRUE     TRUE      FALSE
11     TRUE     TRUE      FALSE
12     TRUE     TRUE      FALSE
13     TRUE     TRUE      FALSE
14     TRUE     TRUE      FALSE
15     TRUE     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          smallspottedCatshark     
------------------------------ 
glm        :            100   %
brt        :            100   %
rf         :            100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  smallspottedCatshark 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.74    |     0       |     0.15    |     -0.99    
brt        :     0.74    |     0.06    |     0.09    |     -1.08    
rf         :     0.81    |     0.08    |     0.14    |     -0.49    
```   modelID              species method replication replicationID success
1        1 smallspottedCatshark    glm subsampling             1    TRUE
2        2 smallspottedCatshark    glm subsampling             2    TRUE
3        3 smallspottedCatshark    glm subsampling             3    TRUE
4        4 smallspottedCatshark    glm subsampling             4    TRUE
5        5 smallspottedCatshark    glm subsampling             5    TRUE
6        6 smallspottedCatshark    brt subsampling             1    TRUE
7        7 smallspottedCatshark    brt subsampling             2    TRUE
8        8 smallspottedCatshark    brt subsampling             3    TRUE
9        9 smallspottedCatshark    brt subsampling             4    TRUE
10      10 smallspottedCatshark    brt subsampling             5    TRUE
11      11 smallspottedCatshark     rf subsampling             1    TRUE
12      12 smallspottedCatshark     rf subsampling             2    TRUE
13      13 smallspottedCatshark     rf subsampling             3    TRUE
14      14 smallspottedCatshark     rf subsampling             4    TRUE
15      15 smallspottedCatshark     rf subsampling             5    TRUE
   training test.dep test.indep
1      TRUE     TRUE      FALSE
2      TRUE     TRUE      FALSE
3      TRUE     TRUE      FALSE
4      TRUE     TRUE      FALSE
5      TRUE     TRUE      FALSE
6      TRUE     TRUE      FALSE
7      TRUE     TRUE      FALSE
8      TRUE     TRUE      FALSE
9      TRUE     TRUE      FALSE
10     TRUE     TRUE      FALSE
11     TRUE     TRUE      FALSE
12     TRUE     TRUE      FALSE
13     TRUE     TRUE      FALSE
14     TRUE     TRUE      FALSE
15     TRUE     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          smallspottedCatshark     
------------------------------ 
glm        :            100   %
brt        :            100   %
rf         :            100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  smallspottedCatshark 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.21    |     0       |     0.02    |     -0.16    
brt        :     0.21    |     -0.01   |     0.01    |     -0.34    
rf         :     0.21    |     -0.01   |     0.02    |     NaN      
```   modelID              species method replication replicationID success
1        1 smallspottedCatshark    glm subsampling             1    TRUE
2        2 smallspottedCatshark    glm subsampling             2    TRUE
3        3 smallspottedCatshark    glm subsampling             3    TRUE
4        4 smallspottedCatshark    glm subsampling             4    TRUE
5        5 smallspottedCatshark    glm subsampling             5    TRUE
6        6 smallspottedCatshark    brt subsampling             1    TRUE
7        7 smallspottedCatshark    brt subsampling             2    TRUE
8        8 smallspottedCatshark    brt subsampling             3    TRUE
9        9 smallspottedCatshark    brt subsampling             4    TRUE
10      10 smallspottedCatshark    brt subsampling             5    TRUE
11      11 smallspottedCatshark     rf subsampling             1    TRUE
12      12 smallspottedCatshark     rf subsampling             2    TRUE
13      13 smallspottedCatshark     rf subsampling             3    TRUE
14      14 smallspottedCatshark     rf subsampling             4    TRUE
15      15 smallspottedCatshark     rf subsampling             5    TRUE
   training test.dep test.indep
1      TRUE     TRUE      FALSE
2      TRUE     TRUE      FALSE
3      TRUE     TRUE      FALSE
4      TRUE     TRUE      FALSE
5      TRUE     TRUE      FALSE
6      TRUE     TRUE      FALSE
7      TRUE     TRUE      FALSE
8      TRUE     TRUE      FALSE
9      TRUE     TRUE      FALSE
10     TRUE     TRUE      FALSE
11     TRUE     TRUE      FALSE
12     TRUE     TRUE      FALSE
13     TRUE     TRUE      FALSE
14     TRUE     TRUE      FALSE
15     TRUE     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          smallspottedCatshark     
------------------------------ 
glm        :            100   %
brt        :            100   %
rf         :            100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  smallspottedCatshark 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.18    |     0       |     0.03    |     -0.18    
brt        :     0.17    |     -0.02   |     0.01    |     -0.36    
rf         :     0.19    |     -0.01   |     0.03    |     -0.08    
```   modelID              species method replication replicationID success
1        1 smallspottedCatshark    glm subsampling             1    TRUE
2        2 smallspottedCatshark    glm subsampling             2    TRUE
3        3 smallspottedCatshark    glm subsampling             3    TRUE
4        4 smallspottedCatshark    glm subsampling             4    TRUE
5        5 smallspottedCatshark    glm subsampling             5    TRUE
6        6 smallspottedCatshark    brt subsampling             1    TRUE
7        7 smallspottedCatshark    brt subsampling             2    TRUE
8        8 smallspottedCatshark    brt subsampling             3    TRUE
9        9 smallspottedCatshark    brt subsampling             4    TRUE
10      10 smallspottedCatshark    brt subsampling             5    TRUE
11      11 smallspottedCatshark     rf subsampling             1    TRUE
12      12 smallspottedCatshark     rf subsampling             2    TRUE
13      13 smallspottedCatshark     rf subsampling             3    TRUE
14      14 smallspottedCatshark     rf subsampling             4    TRUE
15      15 smallspottedCatshark     rf subsampling             5    TRUE
   training test.dep test.indep
1      TRUE     TRUE      FALSE
2      TRUE     TRUE      FALSE
3      TRUE     TRUE      FALSE
4      TRUE     TRUE      FALSE
5      TRUE     TRUE      FALSE
6      TRUE     TRUE      FALSE
7      TRUE     TRUE      FALSE
8      TRUE     TRUE      FALSE
9      TRUE     TRUE      FALSE
10     TRUE     TRUE      FALSE
11     TRUE     TRUE      FALSE
12     TRUE     TRUE      FALSE
13     TRUE     TRUE      FALSE
14     TRUE     TRUE      FALSE
15     TRUE     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          thornbackRay     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  thornbackRay 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     18.08   |     0.06    |     1.56    |     -9.08    
brt        :     17.97   |     0.08    |     1.18    |     -9.59    
rf         :     18.3    |     0.16    |     1.41    |     -7.66    
```   modelID      species method replication replicationID success training
1        1 thornbackRay    glm subsampling             1    TRUE     TRUE
2        2 thornbackRay    glm subsampling             2    TRUE     TRUE
3        3 thornbackRay    glm subsampling             3    TRUE     TRUE
4        4 thornbackRay    glm subsampling             4    TRUE     TRUE
5        5 thornbackRay    glm subsampling             5    TRUE     TRUE
6        6 thornbackRay    brt subsampling             1    TRUE     TRUE
7        7 thornbackRay    brt subsampling             2    TRUE     TRUE
8        8 thornbackRay    brt subsampling             3    TRUE     TRUE
9        9 thornbackRay    brt subsampling             4    TRUE     TRUE
10      10 thornbackRay    brt subsampling             5    TRUE     TRUE
11      11 thornbackRay     rf subsampling             1    TRUE     TRUE
12      12 thornbackRay     rf subsampling             2    TRUE     TRUE
13      13 thornbackRay     rf subsampling             3    TRUE     TRUE
14      14 thornbackRay     rf subsampling             4    TRUE     TRUE
15      15 thornbackRay     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          thornbackRay     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  thornbackRay 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     15.79   |     0.14    |     1.68    |     -14      
brt        :     15.27   |     0.08    |     1.15    |     -14.57   
rf         :     16.36   |     0.16    |     1.58    |     -9.01    
```   modelID      species method replication replicationID success training
1        1 thornbackRay    glm subsampling             1    TRUE     TRUE
2        2 thornbackRay    glm subsampling             2    TRUE     TRUE
3        3 thornbackRay    glm subsampling             3    TRUE     TRUE
4        4 thornbackRay    glm subsampling             4    TRUE     TRUE
5        5 thornbackRay    glm subsampling             5    TRUE     TRUE
6        6 thornbackRay    brt subsampling             1    TRUE     TRUE
7        7 thornbackRay    brt subsampling             2    TRUE     TRUE
8        8 thornbackRay    brt subsampling             3    TRUE     TRUE
9        9 thornbackRay    brt subsampling             4    TRUE     TRUE
10      10 thornbackRay    brt subsampling             5    TRUE     TRUE
11      11 thornbackRay     rf subsampling             1    TRUE     TRUE
12      12 thornbackRay     rf subsampling             2    TRUE     TRUE
13      13 thornbackRay     rf subsampling             3    TRUE     TRUE
14      14 thornbackRay     rf subsampling             4    TRUE     TRUE
15      15 thornbackRay     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          thornbackRay     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  thornbackRay 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.46    |     0       |     0.04    |     -0.44    
brt        :     0.46    |     0.06    |     0.03    |     -0.73    
rf         :     0.46    |     0.06    |     0.04    |     NaN      
```   modelID      species method replication replicationID success training
1        1 thornbackRay    glm subsampling             1    TRUE     TRUE
2        2 thornbackRay    glm subsampling             2    TRUE     TRUE
3        3 thornbackRay    glm subsampling             3    TRUE     TRUE
4        4 thornbackRay    glm subsampling             4    TRUE     TRUE
5        5 thornbackRay    glm subsampling             5    TRUE     TRUE
6        6 thornbackRay    brt subsampling             1    TRUE     TRUE
7        7 thornbackRay    brt subsampling             2    TRUE     TRUE
8        8 thornbackRay    brt subsampling             3    TRUE     TRUE
9        9 thornbackRay    brt subsampling             4    TRUE     TRUE
10      10 thornbackRay    brt subsampling             5    TRUE     TRUE
11      11 thornbackRay     rf subsampling             1    TRUE     TRUE
12      12 thornbackRay     rf subsampling             2    TRUE     TRUE
13      13 thornbackRay     rf subsampling             3    TRUE     TRUE
14      14 thornbackRay     rf subsampling             4    TRUE     TRUE
15      15 thornbackRay     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          thornbackRay     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  thornbackRay 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     0.15    |     -0.07   |     0.03    |     -0.14    
brt        :     0.14    |     0.12    |     0.01    |     -0.17    
rf         :     0.18    |     0.08    |     0.03    |     -0.07    
```   modelID      species method replication replicationID success training
1        1 thornbackRay    glm subsampling             1    TRUE     TRUE
2        2 thornbackRay    glm subsampling             2    TRUE     TRUE
3        3 thornbackRay    glm subsampling             3    TRUE     TRUE
4        4 thornbackRay    glm subsampling             4    TRUE     TRUE
5        5 thornbackRay    glm subsampling             5    TRUE     TRUE
6        6 thornbackRay    brt subsampling             1    TRUE     TRUE
7        7 thornbackRay    brt subsampling             2    TRUE     TRUE
8        8 thornbackRay    brt subsampling             3    TRUE     TRUE
9        9 thornbackRay    brt subsampling             4    TRUE     TRUE
10      10 thornbackRay    brt subsampling             5    TRUE     TRUE
11      11 thornbackRay     rf subsampling             1    TRUE     TRUE
12      12 thornbackRay     rf subsampling             2    TRUE     TRUE
13      13 thornbackRay     rf subsampling             3    TRUE     TRUE
14      14 thornbackRay     rf subsampling             4    TRUE     TRUE
15      15 thornbackRay     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          spinyDogfish     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  spinyDogfish 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     73.31   |     0.07    |     10.42   |     -42.25   
brt        :     72.17   |     0.09    |     9.41    |     -46.78   
rf         :     73.49   |     0.08    |     9.98    |     -42.3    
```   modelID      species method replication replicationID success training
1        1 spinyDogfish    glm subsampling             1    TRUE     TRUE
2        2 spinyDogfish    glm subsampling             2    TRUE     TRUE
3        3 spinyDogfish    glm subsampling             3    TRUE     TRUE
4        4 spinyDogfish    glm subsampling             4    TRUE     TRUE
5        5 spinyDogfish    glm subsampling             5    TRUE     TRUE
6        6 spinyDogfish    brt subsampling             1    TRUE     TRUE
7        7 spinyDogfish    brt subsampling             2    TRUE     TRUE
8        8 spinyDogfish    brt subsampling             3    TRUE     TRUE
9        9 spinyDogfish    brt subsampling             4    TRUE     TRUE
10      10 spinyDogfish    brt subsampling             5    TRUE     TRUE
11      11 spinyDogfish     rf subsampling             1    TRUE     TRUE
12      12 spinyDogfish     rf subsampling             2    TRUE     TRUE
13      13 spinyDogfish     rf subsampling             3    TRUE     TRUE
14      14 spinyDogfish     rf subsampling             4    TRUE     TRUE
15      15 spinyDogfish     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          spinyDogfish     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  spinyDogfish 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     5.45    |     0.18    |     1.03    |     -3.67    
brt        :     5.49    |     0.1     |     0.82    |     -5.24    
rf         :     5.5     |     0.15    |     1       |     -5.04    
```   modelID      species method replication replicationID success training
1        1 spinyDogfish    glm subsampling             1    TRUE     TRUE
2        2 spinyDogfish    glm subsampling             2    TRUE     TRUE
3        3 spinyDogfish    glm subsampling             3    TRUE     TRUE
4        4 spinyDogfish    glm subsampling             4    TRUE     TRUE
5        5 spinyDogfish    glm subsampling             5    TRUE     TRUE
6        6 spinyDogfish    brt subsampling             1    TRUE     TRUE
7        7 spinyDogfish    brt subsampling             2    TRUE     TRUE
8        8 spinyDogfish    brt subsampling             3    TRUE     TRUE
9        9 spinyDogfish    brt subsampling             4    TRUE     TRUE
10      10 spinyDogfish    brt subsampling             5    TRUE     TRUE
11      11 spinyDogfish     rf subsampling             1    TRUE     TRUE
12      12 spinyDogfish     rf subsampling             2    TRUE     TRUE
13      13 spinyDogfish     rf subsampling             3    TRUE     TRUE
14      14 spinyDogfish     rf subsampling             4    TRUE     TRUE
15      15 spinyDogfish     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          spinyDogfish     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  spinyDogfish 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     19.41   |     0.09    |     2.76    |     -14.83   
brt        :     19.25   |     0.06    |     2.22    |     -16.25   
rf         :     20      |     0.13    |     2.68    |     -8.67    
```   modelID      species method replication replicationID success training
1        1 spinyDogfish    glm subsampling             1    TRUE     TRUE
2        2 spinyDogfish    glm subsampling             2    TRUE     TRUE
3        3 spinyDogfish    glm subsampling             3    TRUE     TRUE
4        4 spinyDogfish    glm subsampling             4    TRUE     TRUE
5        5 spinyDogfish    glm subsampling             5    TRUE     TRUE
6        6 spinyDogfish    brt subsampling             1    TRUE     TRUE
7        7 spinyDogfish    brt subsampling             2    TRUE     TRUE
8        8 spinyDogfish    brt subsampling             3    TRUE     TRUE
9        9 spinyDogfish    brt subsampling             4    TRUE     TRUE
10      10 spinyDogfish    brt subsampling             5    TRUE     TRUE
11      11 spinyDogfish     rf subsampling             1    TRUE     TRUE
12      12 spinyDogfish     rf subsampling             2    TRUE     TRUE
13      13 spinyDogfish     rf subsampling             3    TRUE     TRUE
14      14 spinyDogfish     rf subsampling             4    TRUE     TRUE
15      15 spinyDogfish     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          spinyDogfish     
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  spinyDogfish 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     1.52    |     -0.03   |     0.24    |     -1.48    
brt        :     1.26    |     0       |     0.13    |     -2.27    
rf         :     1.32    |     0       |     0.21    |     -5.73    
```   modelID      species method replication replicationID success training
1        1 spinyDogfish    glm subsampling             1    TRUE     TRUE
2        2 spinyDogfish    glm subsampling             2    TRUE     TRUE
3        3 spinyDogfish    glm subsampling             3    TRUE     TRUE
4        4 spinyDogfish    glm subsampling             4    TRUE     TRUE
5        5 spinyDogfish    glm subsampling             5    TRUE     TRUE
6        6 spinyDogfish    brt subsampling             1    TRUE     TRUE
7        7 spinyDogfish    brt subsampling             2    TRUE     TRUE
8        8 spinyDogfish    brt subsampling             3    TRUE     TRUE
9        9 spinyDogfish    brt subsampling             4    TRUE     TRUE
10      10 spinyDogfish    brt subsampling             5    TRUE     TRUE
11      11 spinyDogfish     rf subsampling             1    TRUE     TRUE
12      12 spinyDogfish     rf subsampling             2    TRUE     TRUE
13      13 spinyDogfish     rf subsampling             3    TRUE     TRUE
14      14 spinyDogfish     rf subsampling             4    TRUE     TRUE
15      15 spinyDogfish     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          ThornySkate      
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  ThornySkate 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     15.72   |     0.5     |     4       |     -9.35    
brt        :     15.5    |     0.68    |     3.92    |     -10.13   
rf         :     11.75   |     0.73    |     2.88    |     -5.02    
```   modelID     species method replication replicationID success training
1        1 ThornySkate    glm subsampling             1    TRUE     TRUE
2        2 ThornySkate    glm subsampling             2    TRUE     TRUE
3        3 ThornySkate    glm subsampling             3    TRUE     TRUE
4        4 ThornySkate    glm subsampling             4    TRUE     TRUE
5        5 ThornySkate    glm subsampling             5    TRUE     TRUE
6        6 ThornySkate    brt subsampling             1    TRUE     TRUE
7        7 ThornySkate    brt subsampling             2    TRUE     TRUE
8        8 ThornySkate    brt subsampling             3    TRUE     TRUE
9        9 ThornySkate    brt subsampling             4    TRUE     TRUE
10      10 ThornySkate    brt subsampling             5    TRUE     TRUE
11      11 ThornySkate     rf subsampling             1    TRUE     TRUE
12      12 ThornySkate     rf subsampling             2    TRUE     TRUE
13      13 ThornySkate     rf subsampling             3    TRUE     TRUE
14      14 ThornySkate     rf subsampling             4    TRUE     TRUE
15      15 ThornySkate     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          ThornySkate      
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  ThornySkate 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     11.36   |     0.3     |     3.29    |     -10.11   
brt        :     11.17   |     0.52    |     2.84    |     -8.91    
rf         :     10.81   |     0.51    |     2.7     |     -6.26    
```   modelID     species method replication replicationID success training
1        1 ThornySkate    glm subsampling             1    TRUE     TRUE
2        2 ThornySkate    glm subsampling             2    TRUE     TRUE
3        3 ThornySkate    glm subsampling             3    TRUE     TRUE
4        4 ThornySkate    glm subsampling             4    TRUE     TRUE
5        5 ThornySkate    glm subsampling             5    TRUE     TRUE
6        6 ThornySkate    brt subsampling             1    TRUE     TRUE
7        7 ThornySkate    brt subsampling             2    TRUE     TRUE
8        8 ThornySkate    brt subsampling             3    TRUE     TRUE
9        9 ThornySkate    brt subsampling             4    TRUE     TRUE
10      10 ThornySkate    brt subsampling             5    TRUE     TRUE
11      11 ThornySkate     rf subsampling             1    TRUE     TRUE
12      12 ThornySkate     rf subsampling             2    TRUE     TRUE
13      13 ThornySkate     rf subsampling             3    TRUE     TRUE
14      14 ThornySkate     rf subsampling             4    TRUE     TRUE
15      15 ThornySkate     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          ThornySkate      
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  ThornySkate 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     13.91   |     0.28    |     4.45    |     -13.42   
brt        :     13.65   |     0.42    |     4       |     -11.27   
rf         :     11.91   |     0.57    |     3.48    |     -7.21    
```   modelID     species method replication replicationID success training
1        1 ThornySkate    glm subsampling             1    TRUE     TRUE
2        2 ThornySkate    glm subsampling             2    TRUE     TRUE
3        3 ThornySkate    glm subsampling             3    TRUE     TRUE
4        4 ThornySkate    glm subsampling             4    TRUE     TRUE
5        5 ThornySkate    glm subsampling             5    TRUE     TRUE
6        6 ThornySkate    brt subsampling             1    TRUE     TRUE
7        7 ThornySkate    brt subsampling             2    TRUE     TRUE
8        8 ThornySkate    brt subsampling             3    TRUE     TRUE
9        9 ThornySkate    brt subsampling             4    TRUE     TRUE
10      10 ThornySkate    brt subsampling             5    TRUE     TRUE
11      11 ThornySkate     rf subsampling             1    TRUE     TRUE
12      12 ThornySkate     rf subsampling             2    TRUE     TRUE
13      13 ThornySkate     rf subsampling             3    TRUE     TRUE
14      14 ThornySkate     rf subsampling             4    TRUE     TRUE
15      15 ThornySkate     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE

class                                 : sdmModels 
======================================================== 
number of species                     :  1 
number of modelling methods           :  3 
names of modelling methods            :  glm, brt, rf 
replicate.methods (data partitioning) :  subsampling 
number of replicates (each method)    :  5 
toral number of replicates per model  :  5 (per species) 
test percentage (in subsampling)      :  25 
------------------------------------------
model run success percentage (per species)  :
------------------------------------------
method          ThornySkate      
---------------------- 
glm        :        100   %
brt        :        100   %
rf         :        100   %

###################################################################
model Mean performance (per species), using test dataset (generated using partitioning):
-------------------------------------------------------------------------------

 ## species   :  ThornySkate 
=========================

methods    :     RMSE     |     COR     |     MAE     |     Deviance 
-------------------------------------------------------------------------
glm        :     9.31    |     0.42    |     4.06    |     -9.52    
brt        :     9.05    |     0.63    |     3.6     |     -7.9     
rf         :     7.91    |     0.64    |     3.26    |     -6.46    
```   modelID     species method replication replicationID success training
1        1 ThornySkate    glm subsampling             1    TRUE     TRUE
2        2 ThornySkate    glm subsampling             2    TRUE     TRUE
3        3 ThornySkate    glm subsampling             3    TRUE     TRUE
4        4 ThornySkate    glm subsampling             4    TRUE     TRUE
5        5 ThornySkate    glm subsampling             5    TRUE     TRUE
6        6 ThornySkate    brt subsampling             1    TRUE     TRUE
7        7 ThornySkate    brt subsampling             2    TRUE     TRUE
8        8 ThornySkate    brt subsampling             3    TRUE     TRUE
9        9 ThornySkate    brt subsampling             4    TRUE     TRUE
10      10 ThornySkate    brt subsampling             5    TRUE     TRUE
11      11 ThornySkate     rf subsampling             1    TRUE     TRUE
12      12 ThornySkate     rf subsampling             2    TRUE     TRUE
13      13 ThornySkate     rf subsampling             3    TRUE     TRUE
14      14 ThornySkate     rf subsampling             4    TRUE     TRUE
15      15 ThornySkate     rf subsampling             5    TRUE     TRUE
   test.dep test.indep
1      TRUE      FALSE
2      TRUE      FALSE
3      TRUE      FALSE
4      TRUE      FALSE
5      TRUE      FALSE
6      TRUE      FALSE
7      TRUE      FALSE
8      TRUE      FALSE
9      TRUE      FALSE
10     TRUE      FALSE
11     TRUE      FALSE
12     TRUE      FALSE
13     TRUE      FALSE
14     TRUE      FALSE
15     TRUE      FALSE